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Kaew 007 draft genome information

 

number

n50

Longest

Total bases

Contig

910,171

8,374

222,220

617,793,076

Scaffold

85,963

10,291

252,508

562,429,618

 

 

 

 

 

RepeatMasker information

number of elements

length occupied (bp)

percentage of sequence

Retroelements

61089

52194330

9.28%

SINEs:

15

1404

0%

Penelope

7

486

0%

LINEs:

3429

893151

0.16%

LTR elements:

57645

51299775

9.12%

DNA transposons

23125

4710456

0.84%

hobo-Activator

12738

3163794

0.56%

Tc1-IS630-Pogo

136

18919

0%

Tourist/Harbinger

567

78016

0.01%

Other (Mirage,P-element, Transib)

2

102

0%

Unclassified:

3198

972721

0.17%

Total interspersed repeats:

57877507

10.29%

Small RNA:

998

120673

0.02%

Satellites:

266

29357

0.01%

Simple repeats:

227937

10986398

1.95%

Low complexity:

56705

3054213

0.54%


RepeatMasker result Download